July 2020 Commit Log

Number of Commits:
31
Number of Active Developers:
3
adurocher 2020-07-21 17:46 Rev.: 3769

Fixed missing xios function in interface

10 lines of code changed in 2 files:

adurocher 2020-07-21 11:08 Rev.: 3768

Offload post-processing to XIOS

use expressions in .xml files to offload computations previously done in phys_output_write to XIOS

696 lines of code changed in 8 files:

lguez 2020-07-19 17:25 Rev.: 3767

Store `delta_sal` instead of `s_int`

Revision analoguous to revision [3744], for salinity. Store as a state
variable and send to the ocean `delta_sal`, the difference between
ocean-air interface salinity and bulk salinity, instead of `s_int`,
the interface salinity.

So replace dummy argument `s_int` of procedure `cpl_send_ocean_fields`
by dummy argument `delta_sal`. Replace dummy argument `s_int` of
procedures `ocean_cpl_noice` and `surf_ocean` by dummy argument
`delta_sal`. Replace variable `s_int` of module `phys_state_var_mod`
by variable `delta_sal`. Rename local variable `ys_int` of procedure
`pbl_surface` to `ydelta_sal`. Set variable `delta_sal` of module
`phys_state_var_mod` to 0 for an appearing ocean fraction and a
missing startup field. Replace variable `o_s_int` of module
`phys_output_ctrlout_mod` by variable `o_delta_sal`.

Rename variables `cpl_s_int` and `cpl_s_int_2D` of module `cpl_mod` to
`cpl_delta_sal` and `cpl_delta_sal_2D`. Rename variable `ids_s_int` of
module oasis to `ids_delta_sal`. Change `infosend(ids_delta_sal)%name`
to "CODELSSS".

74 lines of code changed in 10 files:

lguez 2020-07-17 18:24 Rev.: 3766

Bug fix: read before `close_startphy`

Bug fix: in procedure phyetat0, read `s_int`, `delta_sst`, `ds_ns` and
`dt_ns` before the call to `close_startphy`.

17 lines of code changed in 1 file:

adurocher 2020-07-15 22:14 Rev.: 3765

Use `cvl_comp_threshold` to control whether to use compression or not

cvl_comp_threshold now defaults to 0 (never compress)

17 lines of code changed in 3 files:

adurocher 2020-07-15 22:14 Rev.: 3764

Removed some timers in cv3a_driver

3 lines of code changed in 1 file:

adurocher 2020-07-15 22:14 Rev.: 3765

Use `cvl_comp_threshold` to control whether to use compression or not

cvl_comp_threshold now defaults to 0 (never compress)

0 lines of code changed in 1 file:

adurocher 2020-07-15 22:14 Rev.: 3763

Remove useless zero-initializations

57 lines of code changed in 2 files:

adurocher 2020-07-15 22:14 Rev.: 3762

Added a path to execute cv3a_driver without compression at all

+ fix : Compute coef_convective BEFORE cv3a_driver_compressed

280 lines of code changed in 1 file:

adurocher 2020-07-15 22:14 Rev.: 3761

Moved compressed part of cv3a_driver to separate subroutine

264 lines of code changed in 1 file:

adurocher 2020-07-15 22:14 Rev.: 3760

Use blocks to allocate compressed arrays to the right size

418 lines of code changed in 3 files:

adurocher 2020-07-15 22:14 Rev.: 3759

Fixed array size in `cv3_tracer` to match compressed arrays

7 lines of code changed in 1 file:

adurocher 2020-07-15 22:14 Rev.: 3758

Refactoring and cleaning cv3a_driver

505 lines of code changed in 3 files:

adurocher 2020-07-15 22:14 Rev.: 3757

Create separate subroutines for cv3a_driver and cv4a_driver

1566 lines of code changed in 2 files:

oboucher 2020-07-10 23:50 Rev.: 3756

The fraction of SW down radiation that is diffuse is extracted from radlwsw.F90 and passed on to pbl_surface for inclusion in fields_out for transfer to ORCHIDEE if it requested in input file coupling_fields.def. Hence there is nothing automatic here. The fraction of SW down radiation is also added as a diagnostic. To satisfy the case when this new quantity is used in ORCHIDEE, then it is added in the restart (and read in case it is there).

273 lines of code changed in 9 files:

adurocher 2020-07-10 18:16 Rev.: 3755

Fixed compilation error without RRTM or without XIOS

11 lines of code changed in 2 files:

adurocher 2020-07-08 19:49 Rev.: 3754

Fix conditional compilation to compile without XIOS

116 lines of code changed in 8 files:

adurocher 2020-07-08 19:49 Rev.: 3753

Refactoring IOs : added new phys_output_write_xios with XIOS only

This is a combination of 9 commits.

Added phys_output_write_xios
Moved C preprocessing in phys_output_write_xios_mod to a separate file
Added iophy_xios
Removed non-xios code from phys_output_write_xios_mod
Add separate subroutine for debug prints
Cleaning and refactoring iophy_xios
Only one test for vars_defined
Check once for inactive xios fields
Fix bug

2109 lines of code changed in 6 files:

adurocher 2020-07-08 19:49 Rev.: 3754

Fix conditional compilation to compile without XIOS

0 lines of code changed in 2 files:

adurocher 2020-07-08 19:49 Rev.: 3752

Check if field is active before gather (static check)

Check is still performed at each timestep, but the static check is perfromed (at_current_timestep_arg=.false.). This should have less overhead because the static check is faster.

2 lines of code changed in 1 file:

adurocher 2020-07-08 19:49 Rev.: 3753

Refactoring IOs : added new phys_output_write_xios with XIOS only

This is a combination of 9 commits.

Added phys_output_write_xios
Moved C preprocessing in phys_output_write_xios_mod to a separate file
Added iophy_xios
Removed non-xios code from phys_output_write_xios_mod
Add separate subroutine for debug prints
Cleaning and refactoring iophy_xios
Only one test for vars_defined
Check once for inactive xios fields
Fix bug

0 lines of code changed in 2 files:

adurocher 2020-07-08 19:49 Rev.: 3751

Check if field is active before omp_gather (dynamic check)

At each timestep and for every field xios_field_is_active( <field>, at_current_timestep_arg=.true.) is called

0 lines of code changed in 1 file:

adurocher 2020-07-08 19:49 Rev.: 3750

Optimize gather_omp_r*

0 lines of code changed in 1 file:

adurocher 2020-07-08 19:49 Rev.: 3749

Added getin parameter to enable/disable profiling

64 lines of code changed in 2 files:

adurocher 2020-07-08 19:49 Rev.: 3751

Check if field is active before omp_gather (dynamic check)

At each timestep and for every field xios_field_is_active( <field>, at_current_timestep_arg=.true.) is called

0 lines of code changed in 1 file:

adurocher 2020-07-08 19:49 Rev.: 3750

Optimize gather_omp_r*

0 lines of code changed in 1 file:

adurocher 2020-07-08 19:49 Rev.: 3749

Added getin parameter to enable/disable profiling

0 lines of code changed in 1 file:

oboucher 2020-07-05 14:48 Rev.: 3748

Correcting initialisation of missing_val for the computation of wind100m
Then other initialisations lower down in the code are removed.

4 lines of code changed in 1 file:

lguez 2020-07-02 16:58 Rev.: 3747

Bug fix: revert revision [3601]

Bug fix: revert revision [3601]. Procedure `phys_output_write` is
called a first time by `physiq` before the call to phyetat0, so before
ftsoil is allocated. So we cannot reference `ftsoil(:, nsoilmx,
is_ter)` in `phys_output_write`.

3 lines of code changed in 2 files:

adurocher 2020-07-02 10:04 Rev.: 3746

Fixed undefined reference to omp_get_team_size in physics timers

7 lines of code changed in 1 file:

lguez 2020-07-01 18:57 Rev.: 3744

Store `delta_sst` instead of `sst_nff`

Store as a state variable the difference between ocean-air interface
temperature and bulk SST instead of `sst_nff`, which can be either
interface temperature or bulk SST. This is clearer. Also, it is
analoguous to what we will do with salinity.

So replace the two dummy arguments `tsurf_in` and `sst_nff` of
procedure `cpl_send_ocean_fields` by a single dummy argument
`delta_sst`. Replace dummy argument `sst_nff` of procedures
`ocean_cpl_noice` and `surf_ocean` by dummy argument
`delta_sst`. Replace variable `sst_nff` of module `phys_state_var_mod`
by variable `delta_sst`. Rename local variable `ysst_nff` of procedure
`pbl_surface` to `ydelta_sst`. Set variable `delta_sst` of module
`phys_state_var_mod` to 0 for an appearing ocean fraction and a
missing startup field. Replace variable `o_sst_nff` of module
`phys_output_ctrlout_mod` by variable `o_delta_sst`.

Rename variables `cpl_delta_temp` and `cpl_delta_temp_2D` of module
`cpl_mod` to `cpl_delta_sst` and `cpl_delta_sst_2D`, clearer. Rename
variable `ids_delta_temp` of module oasis to `ids_delta_sst`. Change
`infosend(ids_delta_temp)%name` to "CODELSST".

61 lines of code changed in 10 files:

June 2020 »

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